PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056624-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 118aa    MW: 13358.7 Da    PI: 7.6049
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056624-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-081457344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT++  + + +a + + ++   +W+ +a+++  g+ + ++k ++
  PSME_00056624-RA 14 NWTPQQNKAFENALAIYDKDtpdRWHNVASMVS-GKNPQEVKKHY 57
                      8********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7071065IPR017884SANT domain
SMARTSM007171.3E-71163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-41363IPR009057Homeodomain-like
SuperFamilySSF466891.79E-121468IPR009057Homeodomain-like
CDDcd001671.45E-61461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MAGQSNSSSN GATNWTPQQN KAFENALAIY DKDTPDRWHN VASMVSGKNP QEVKKHYEIL  60
LEDLNRIEAG QVPFPNYRSS GSNNNSNSVE EERRHVQNIS ALYKFVNFRI IEVCSSLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-34787383RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1099335e-92BT109933.1 Picea glauca clone GQ03213_O06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254802.12e-37PREDICTED: protein RADIALIS-like 3
SwissprotQ58FS31e-34RAD_ANTMA; Transcription factor RADIALIS
TrEMBLD5ADC19e-39D5ADC1_PICSI; Putative uncharacterized protein
STRINGPOPTR_0004s16270.15e-36(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-29RAD-like 6